PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0010s0067.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 198aa    MW: 22443.6 Da    PI: 9.3614
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0010s0067.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.7e-33161142102
                          HHHHHHHHHCTG.......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
         HSF_DNA-bind   2 Flkklyeilede.......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                          Fl+k+y++le++       + k+++sw++ng+ fvv+ ++efa+ +LpkyFkh+nf+SF+RQLn+YgFkk+++++         weF+h+
  Kaladp0010s0067.1.p  16 FLSKTYDLLEEAgdagegrNGKKIVSWNANGDGFVVWCTSEFADILLPKYFKHNNFSSFIRQLNTYGFKKTTSKR---------WEFQHE 96 
                          9*********666666666999*************************************************9998.........****** PP

                          XXXXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                          +F+kg+++ll +i rk+ 
  Kaladp0010s0067.1.p  97 KFRKGQRHLLAEISRKRC 114
                          ***************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.5E-3411106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-4212112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-2713112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.7E-3016112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-122346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-126173IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-127486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDQLSCSGKA RCPAPFLSKT YDLLEEAGDA GEGRNGKKIV SWNANGDGFV VWCTSEFADI  60
LLPKYFKHNN FSSFIRQLNT YGFKKTTSKR WEFQHEKFRK GQRHLLAEIS RKRCEPSVFP  120
TFLRASGASS GRWEQSDRRL LLMEENESLR KENLELQTQI QQLKALEMKL LDCLSGCVGT  180
ATGAPSSSHC IIRRHSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B7e-20121122105Heat shock factor protein 2
5d8l_B7e-20121122105Heat shock factor protein 2
5d8l_D7e-20121122105Heat shock factor protein 2
5d8l_F7e-20121122105Heat shock factor protein 2
5d8l_H7e-20121122105Heat shock factor protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305140.27e-79hypothetical protein POPTR_0004s04260g
RefseqXP_007212104.15e-79hypothetical protein PRUPE_ppa011804mg
TrEMBLB9H2V98e-79B9H2V9_POPTR; Uncharacterized protein
TrEMBLM5WVD45e-79M5WVD4_PRUPE; Uncharacterized protein
STRINGPOPTR_0004s04260.12e-78(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-39heat shock transcription factor B2A